Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015895055.1_cds_XP_016447623.1_42366
CDS Infomation

[gene=LOC107772647] [db_xref=GeneID:107772647] [protein=pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like] [protein_id=XP_016447623.1] [location=complement(join(5258..5626,6684..7115,8887..9044,9124..9214,10292..10405,14295..14486,14610..14691,15230..15421,15603..16219))] [gbkey=CDS]
Sequence

ATGGTGGCAATTATCCTGACAGAATCTATATTCGGAGCTTCTTCTTCTTGTACTGATTTA
AATGGAGTTTTTGGTTCAAATTACCTCCGTTGCCCTTGTTTTTCATCAAGATTTTCACTT
TCCGAGACACCCTTTTGGGAAATTTCTCTGGGAAACAAAAGGGTGAAAAAGCAGAAGAGA
ATTCTGGGTCTTGGCAGAGTCTCTTGTAGCTTAGGTAATGGGATAGTTGATAAAGAAGAG
CTTGAATTCAAGCCTTCATTTGATGAGTATTTGAAAGCCATGGAGTCTTTAAAAGAGAAG
AAAAAGAGTGATAGTGTTATTAGGAGAAAGAAAGGTGAAGAAGAAAAGGGTAAATTTGGA
AAGTATGTGAAGAAGAAATGTGTAGAAAGTTCTGATATTGTGGAGAAACATGAAGGAGTT
GGAGCTGTGGAAAAGAAGGGTAGTGGTGGGAAATTGGAATTTAGAAAGGTGATGATTCAG
AAAAGAGAGAGCATAAGTACAAAGCATGTTGATGAGATGGAAAGAGCTGCTTTTAAGTCA
ATGGATGACGATCCTTATGATAAGCCAAGAGTTACTAAGGCAGACATGGAACAGAGAATC
CAAAGGCTTGCAAAGTGTCTAAATGGTGCAGACGTTGACATGCCTGAGTGGATGTTCTCT
AAAATGATGCGAAGTGCTCAGATTAGATTCTCCGATCATTCTATCTTGAGGATTATCCAA
ATATTGGGTAGATTGGGAAATTGGAGACGAGTGCTGCAAGTCATTGAGTGGCTTCGTTCA
CGTGAACGCTTCAAGTCACACAAGTTAAGATATATTTACACGGCTGCACTGGATGCATTG
GGAAAGGCTAGGAGGCCAGTGGAAGCGCTAAACTTGTTTCGTGCAATGCAGGAACACATA
TCATCGTATCCAGACCTTGTGGCTTACCATTGTATTGCTGTCACTCTTGGACAAGCAGGA
CATATGAAGGAACTCTTTGACATTATCGATACCATGCAATCACCACCCAGAAAGAAATTC
AAGACTAATATTATTGAGAAGTTTGATCCACGACTTGAGCCGGACGTTGTCATCTATAAT
GCTGTTCTAAATGCATGTGCTCGCCGTAAAAGCTGGGAGGGTGCGTTTTGGGTGCTACAA
CAGCTAAAGCTCCGGGACCAGCAGCCTTCAGTAACAACATATGGATTAGTCATGGAGGTT
ATGTTCGAATGTGGCAAATACAATTTGGTGCATGACTTTTTCAAGAAAATGCAGAAGTCA
TGTATTCCCAATGCTTTAACCTATAAAGTTCTTGTGAGTACTCTTTGGAAGGAAGGAAAA
ACAGACGAGGCCATACTGGCTGTAGAAGATATGGAAAGACGAGGAATTGTGGGCACTGCC
AGTTTGTATTATGACCTTGCTCGTTGCCTTTGTAGTGCGGGGAGGTGTGAGGAGGCACTG
ATGCAAATGGAAAAAATATGCAAAGTTGCTACCAAGCCTCTAGTGGTGACTTATACTGGT
CTACTTCAAGCTTGTGTGGACTCTGGTGACGTTCAGAGTGGAGCATACATCTTTAACCAA
ATGAACCAGTTTTGCTCCCCAAATTTGGTAACTTACAATATAATGCTAAAAGCTTATCTG
GATAATGGGATGTTTGAAGAAGCAAGGCAGTTATTTTTCAAGTTATTGGATAACGGTAAC
CGTATTAGCAGTAAATTGGACAGTAAGGATAAGGTTTTACCAGATGTCTACACATTCAAC
TTAATGTTGGATGCATATGCTGCTGAGAAGAAGTGGGATGATCTCGAGTTTACCTACTCA
CGTATGCTGAAATATGGATATCGCTTCAATCCAAAACGTCACATTCAGATGGTACTTGAC
TCCTGCACTGCTGGAAAGGTGGAATTATTAGAAGCAACTTGGAAGGACTTGGCTCGGGCT
GATCGGGTTCCACCAGTGCCACTAGTCAAAGAAATGTTCCGCCTGCAGCTGGAGAGAGGC
GATTTTTCCGCTGCCCTGGCTTGTGTTGCTGATTATCCTTCCTCTGAATCACAGGCGTTT
TCTGCCAAGTTTTGGATGAAATTTTTCGTGGAAAATTCTGATAGATTATCTGATGGTACT
CTTTTCAGATTGCTACAAGTGAGCCCTGTCATTGCCAGAAACGACAGCAGAATACTTAAC
AATCTGATGGCTTCTTGTAAAGAATTTTTGAGAACTCGATCAGCAAAACTTTGCAGAGTT
CATAGCGAAACAGCTCTAGTTTGTTAA

Peptide Sequence

PEP ID

XP_016447623.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like [Nicotiana tabacum]
Sequence

MVAIILTESIFGASSSCTDLNGVFGSNYLRCPCFSSRFSLSETPFWEISLGNKRVKKQKR
ILGLGRVSCSLGNGIVDKEELEFKPSFDEYLKAMESLKEKKKSDSVIRRKKGEEEKGKFG
KYVKKKCVESSDIVEKHEGVGAVEKKGSGGKLEFRKVMIQKRESISTKHVDEMERAAFKS
MDDDPYDKPRVTKADMEQRIQRLAKCLNGADVDMPEWMFSKMMRSAQIRFSDHSILRIIQ
ILGRLGNWRRVLQVIEWLRSRERFKSHKLRYIYTAALDALGKARRPVEALNLFRAMQEHI
SSYPDLVAYHCIAVTLGQAGHMKELFDIIDTMQSPPRKKFKTNIIEKFDPRLEPDVVIYN
AVLNACARRKSWEGAFWVLQQLKLRDQQPSVTTYGLVMEVMFECGKYNLVHDFFKKMQKS
CIPNALTYKVLVSTLWKEGKTDEAILAVEDMERRGIVGTASLYYDLARCLCSAGRCEEAL
MQMEKICKVATKPLVVTYTGLLQACVDSGDVQSGAYIFNQMNQFCSPNLVTYNIMLKAYL
DNGMFEEARQLFFKLLDNGNRISSKLDSKDKVLPDVYTFNLMLDAYAAEKKWDDLEFTYS
RMLKYGYRFNPKRHIQMVLDSCTAGKVELLEATWKDLARADRVPPVPLVKEMFRLQLERG
DFSAALACVADYPSSESQAFSAKFWMKFFVENSDRLSDGTLFRLLQVSPVIARNDSRILN
NLMASCKEFLRTRSAKLCRVHSETALVC

Transcript Sequence

Gene sequence data has not been registered.